Genetics and Genomics



Genetics and Genomics


Sharon L. Lewis





Reviewed by Mindy B. Tinkle, RN, PhD, WHNP-BC, Associate Professor and Chair, Research and PhD Studies, University of New Mexico, College of Nursing, Albuquerque, New Mexico; Laura Mallett, RN, MSN, Assistant Lecturer, University of Wyoming, Fay W. Whitney School of Nursing, Laramie, Wyoming; and Bernice Coleman, PhD, ACNP-BC, FAHA, Nurse Practitioner, Heart Transplantation and Ventricular Assist Device Programs, Cedars Sinai Medical Center, Los Angeles, California.



Genetics and Genomics


In the 1860s an Austrian monk named Gregor Mendel, while experimenting with pea plants, discovered how traits are transmitted from parents to offspring. This discovery laid the foundation for modern genetics, the study of genes and their role in inheritance. Genetics determines the way that certain traits or conditions are passed down from one generation to another. Genomics is the study of all of a person’s genes (the genome), including interactions of these genes with each other and with the person’s environment. (Common terms used in genetics and genomics are defined in Table 13-1.) Genomics includes the study of complex diseases such as heart disease, asthma, diabetes mellitus, and cancer because these diseases are typically caused by a combination of genetic and environmental factors rather than by a single gene.



TABLE 13-1


GLOSSARY OF GENETIC AND GENOMIC TERMS






























































































Term Definition
Allele An alternative form of a gene. Each person receives two alleles of a gene, one from each biologic parent. Different alleles produce variations in inherited traits such as eye color and blood type.
Autosome Any chromosome that is not a sex chromosome. Humans have 22 pairs of autosomes.
Carrier Individual who carries a copy of a mutated gene for a recessive disorder.
Chromosome A compact structure containing DNA and proteins present in nearly all cells of the body. Normally each cell has 46 chromosomes in 23 pairs. Each biologic parent contributes one of each pair of chromosomes.
Codominance Two dominant versions of a trait that are both expressed in the same individual.
Congenital disorder Condition present at birth.
Dominant allele Gene that is expressed in the phenotype of a heterozygous individual.
Familial disorder Condition that affects more than one person in a family.
Gene The basic unit of heredity information located on a specific part of a chromosome. Genes direct cells to make proteins and guide almost every aspect of operation and repair of cells.
Genetic risk factor A change in a gene that increases a person’s risk of developing a disease.
Genetics Study of genes and their role in inheritance.
Genome All the DNA contained in an individual.
Genome-wide association study (GWAS) A study approach that involves scanning complete sets of DNA (genomes) of many individuals to find genetic variations associated with a particular disease.
Genomics Study of how genes interact and influence people’s biologic and physical characteristics.
Genotype Genetic identity of an individual. This identity does not show as outward characteristics.
Hereditary Transmission of a disease, condition, or trait from parent to children.
Heterozygous Having two different alleles for one given gene, one inherited from each parent.
Homozygous Having two identical alleles for one given gene, one inherited from each parent.
Locus Position of a gene on a chromosome.
Mutation A change in DNA or a gene. Sometimes these changes are passed from parent to children.
Oncogene Gene that is able to initiate and contribute to the conversion of normal cells to cancer cells.
Pedigree Family tree that contains the genetic characteristics and disorders of that particular family.
Pharmacogenetics Study of variability of responses to drugs related to variations in single genes.
Pharmacogenomics Study of variability of responses to drugs related to variations in and interactions of multiple genes.
Phenotype Observable traits or characteristics of an individual (e.g., hair color).
Protooncogene Normal cellular genes that are important regulators of normal cellular processes. Mutations can activate them to become oncogenes.
Recessive allele Allele that has no noticeable effect on the phenotype in a heterozygous individual.
Trait Physical characteristic that one inherits, such as hair or eye color.
X-linked gene Gene located on the X chromosome. In general, sex-linked disorders are only seen in males.

A person’s genes can have a profound impact on health and disease. More than 4000 diseases are thought to be related to altered genes. Genomic factors play a role in 9 of the 10 leading causes of death in the United States, including heart disease, cancer, diabetes, stroke, and Alzheimer’s disease.1


Genomics may help us understand why some people who eat healthy diets and exercise regularly still die at a young age of cancer, whereas some people eat unhealthy diets and never exercise, and yet live to an old age.


The identification of a genetic basis for many human diseases has the potential to strongly influence the care of patients at risk for or diagnosed with a disease that has a genetic link. You need to know the basic principles of genetics, be familiar with the impact that genetics and genomics have on health and disease, and be prepared to assist the patient and family with genetic issues.



Basic Principles of Genetics


Genes.


Genes are the basic units of heredity. There are approximately 20,000 to 25,000 genes in each person’s genetic makeup, or genome. Genes encode (carry the instructions) for proteins that direct the activities of cells and functions of the body. Genes control how a cell functions, including how quickly it grows, how often it divides, and how long it lives. To control these functions, genes produce proteins that perform specific tasks and act as messengers for the cell. Therefore it is essential that each gene have the correct instructions or “code” for making its protein so that the protein can perform the proper function for the cell.2


Genes are arranged in a specific linear formation along a chromosome (Fig. 13-1). Each gene has a specific location on a chromosome, termed a locus. An allele is one of two or more alternative forms of a gene that occupy corresponding loci on homologous chromosomes (a pair of chromosomes having corresponding deoxyribonucleic acid [DNA] sequences, with one coming from the mother and the other from the father). Each allele codes for a specific inherited characteristic.



When there are two different alleles, the allele that is fully expressed is the dominant allele. The other allele that lacks the ability to express itself in the presence of a dominant allele is the recessive allele. Physical traits expressed by an individual are termed the phenotype, and the actual genetic makeup of the individual is termed the genotype.




DNA.


Genes are made up of a nucleic acid called deoxyribonucleic acid (DNA). DNA stores genetic information and encodes the instructions for synthesizing specific proteins needed to maintain life. DNA also dictates the rate at which proteins are made. Every somatic cell in a person’s body has the same DNA.


The information in DNA is stored as a code made up of four nitrogenous bases: adenine (A), guanine (G), cytosine (C), and thymine (T). Human DNA consists of about 3 billion bases, and more than 99% of those bases are the same in all people. The order (or sequence) of these bases determines the information for building and maintaining an organism. This is similar to the way letters of the alphabet are used to create words and sentences.


DNA bases pair up with each other, A with T and C with G, to form units called base pairs. Each base is also attached to a sugar molecule and a phosphate molecule (Fig. 13-2). Together, a base, sugar, and phosphate are called a nucleotide. Nucleotides are arranged in two long strands that form a spiral called a double helix. The structure of the double helix is somewhat like a ladder, with the base pairs forming the ladder’s rungs and the sugar and phosphate molecules forming the ladder’s vertical sidepieces.



DNA can replicate (make copies of itself). Each strand of DNA in the double helix can serve as a pattern for duplicating the sequence of bases. When cells divide, each new cell needs to have an exact copy of the DNA that was in the parent (original) cell.


If the chromosomes in one of your cells were uncoiled and placed end-to-end, the DNA would be about 6 feet long. If all of the DNA in your body were connected, it would stretch about 67 billion miles.3







Genetic Mutations


A mutation is any change in the usual DNA sequence. Subtle variations in DNA are called polymorphisms (meaning many forms). Many of these gene polymorphisms account for slight variations among people such as hair and eye color. However, some gene variations may result in disease or an increased risk for disease. These gene variations or changes are referred to as mutations.


A genetic mutation is like a spelling error in a gene’s sequence. For example, in people with sickle cell disease, a substitution of a single base (adenine is replaced by thymine) in a single gene (β-globin gene) causes the disease (Fig. 13-3). Mutations range in size from a single DNA base (building block) to a large segment of a chromosome.



The change in gene structure may alter the type and/or amount of protein produced. The protein may not work at all, or it may work incorrectly. In some cases, genetic mutations do not have an obvious effect on the people who have them.



Types of Mutations.


Genetic mutations occur in two ways. They can be inherited from a parent (germline mutation) or acquired (somatic mutation) during a person’s lifetime.


Germline mutations are passed from parent to child. These mutations are present in the oocyte and sperm cells. This type of mutation is present throughout a person’s life in virtually every cell in the body.


Acquired (somatic) mutations occur in the DNA of a cell at some time during a person’s life. An acquired mutation is passed on to all cells that develop from that single cell. These mutations in somatic cells cannot be passed on to the next generation. Acquired mutations can occur if (1) a mistake is made as DNA replicates during cell division or (2) environmental factors alter the DNA.


Mutations can occur when a cell is dividing. Considering that 3 billion base pairs are replicated in each cell division, DNA replication is very accurate. However, during replication occasionally mistakes such as deletions, insertions, or duplication of DNA material can occur. Although DNA repair enzymes can correct replication errors, mistakes can go uncorrected.4


In addition to cell division, DNA damage can also occur from environmental factors. For example, ultraviolet (UV) radiation can cause DNA damage, leading to skin cancer. Toxins in cigarettes can lead to lung cancer. Many chemotherapy drugs used to treat cancer target the DNA of both cancer cells and healthy cells. In the process these drugs increase a person’s risk of developing secondary cancers (see Chapter 16).


Cells have built-in mechanisms that catch and repair most of the changes that occur during DNA replication or from environmental damage. However, as we age, our DNA repair does not work as effectively and we accumulate changes in our DNA.



Inheritance Patterns


Genetic disorders can be categorized into autosomal dominant, autosomal recessive, or X-linked (sex-linked) recessive disorders (Table 13-2). If the mutant gene is located on an autosome, the genetic disorder is called autosomal. If the mutant gene is on the X chromosome, the genetic disorder is called X-linked.



Family pedigrees for autosomal recessive and dominant disorders and X-linked recessive disorders are shown in Figs. 13-4 and 13-5.




Autosomal dominant disorders are caused by a mutation of a single gene pair (heterozygous) on a chromosome. A dominant allele prevails over a normal allele. Autosomal dominant disorders show variable expression. Variable expression means that the symptoms expressed by the individuals with the mutated gene vary from person to person even though they have the same mutated gene. Although autosomal dominant disorders have a high probability of occurring in families, sometimes these disorders cause a new mutation or skip a generation. This is termed incomplete penetrance.


Autosomal recessive disorders are caused by mutations of two gene pairs (homozygous) on a chromosome. A person who inherits one copy of the recessive allele does not develop the disease because the normal allele predominates. However, this person is a carrier.


X-linked recessive disorders are caused by a mutation on the X chromosome. Usually only men are affected by this disorder because women who carry the mutated gene on one X chromosome have another X chromosome to compensate for the mutation. However, women who carry the mutated gene can transmit it to their offspring. It is possible for women to have X-linked recessive disorders, and this can occur when an affected male mates with an unaffected female carrier. This points to the importance of testing the carrier status of the female partner of affected males. X-linked dominant disorders do exist but are rare.


Multifactorial inherited conditions are caused by a combination of genetic and environmental factors. These disorders run in families but do not show the same inherited characteristics as the single gene mutation conditions. Multifactorial conditions include diabetes mellitus, obesity, hypertension, cancer, and coronary artery disease.



Human Genome Project


The Human Genome Project (HGP), which was completed in 2003, mapped the entire human genome.5 Analysis of the data will continue for many years. The knowledge gained through the HGP will (1) help improve the diagnosis of diseases, (2) allow for earlier detection of genetic predisposition to diseases, and (3) play a critical role in determining risk assessment for genetic-related diseases. In addition, the results of the HGP assist in matching organ donors with transplant recipients.



Genetic Disorders


A genetic disorder is caused in whole or in part by an alteration in the DNA sequence. As discussed in the section on genetic mutations (pp. 192-193), genetic disorders can be inherited (person born with altered genetic code) or they can be acquired (e.g., replication errors, damage to DNA from toxins). Genetic disorders can be caused by (1) a mutation in one gene (single gene disorder); (2) mutations in multiple genes (multifactorial inheritance disorder), which are often related to environmental factors; or (3) damage to chromosomes (changes in the number or structure of entire chromosomes).



Classification of Genetic Disorders


Single Gene Disorders.


Some genetic disorders result from a single gene mutation (Fig. 13-6, A). Examples of these diseases include cystic fibrosis, sickle cell disease, and polycystic kidney disease. The pattern of inheritance for single gene disorders can be autosomal dominant, autosomal recessive, or X-linked. Single gene disorders are relatively rare compared with more commonly occurring multifactorial genetic disorders such as diabetes mellitus and heart disease.




Multifactorial Genetic Disorders.


Multifactorial genetic disorders are complex diseases that result from small inherited variations in genes, often acting together with environmental factors (Fig. 13-6, B). Heart disease, diabetes, and most cancers are examples of such disorders.


Although many common diseases are usually caused by inheritance of mutations in multiple genes, such diseases can also be caused by rare hereditary mutations in a single gene. In these cases, genetic mutations that cause or strongly predispose a person to these diseases run in a family. These mutations can significantly increase each family member’s risk of developing the disease. One example is breast cancer, where inheritance of a mutated BRCA1 or BRCA2 gene confers significant risk of developing the disease.


Stay updated, free articles. Join our Telegram channel

Nov 17, 2016 | Posted by in NURSING | Comments Off on Genetics and Genomics

Full access? Get Clinical Tree

Get Clinical Tree app for offline access